杨晓飞老师
2019-01-27 00:02:28
88
基本信息
姓名： 杨晓飞职称： 讲师
职位： 无
职位： 无
地址：西安交通大学彭康楼105
电话：15877348154
传真：无
电子邮件： xfyang@xjtu.edu.cn
教育经历
学士，2007年-2011年，西安电子科技大学，软件工程
博士，2011年-2016年，西安电子科技大学，计算机科学与技术
工作经历
2017年6月-至今 西安交通大学 电信学院 讲师
2018年10月-至今 杰克逊实验室（美国） 访问学者
学术荣誉与获奖
2015年12月 “博士研究生国家奖学金”
2014年12月 “博士研究生国家奖学金”
学术兼职
担任国际著名期刊 Database, Neurocomputing, Briefings in Functional Genomics等期刊审稿人，担任中国自动化大会(CAC2015，CAC2018)评审专家。
研究方向
生物信息学
论文著选
著作
[1] Kai Ye, Li Guo, Xiaofei Yang, et al, Split-Read Indel and Structural Variant Calling Using PINDEL, Methods in molecular biology (Clifton, N.J.) 1833:95-105, July 2018, DOI: 10.1007/978-1-4939-8666-8_7 (丛书章节)
论文
[1] Li Guo*, Thilo Winzer*, Xiaofei Yang*, Yi Li*, Zemin Ning*, Zhesi He, Roxana Teodor, Ying Lu, Tim A. Bowser, Ian A. Graham†, Kai Ye†, The opium poppy genome and morphinan production, Science, 30 Aug 2018: eaat4096 DOI: 10.1126/science.aat4096, (*:并列一作, †通讯作者）
[2] Xiaofei Yang, Lin Gao, Shihua Zhang. Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns, Briefings in Bioinformatics, 2017, 18(5):761-773.
[3] Xiaofei Yang, Xiaojian Shao, Lin Gao, et al. Systematic DNA methylation analysis of multiple cell lines reveals common and specific patterns within and across tissues of origin[J]. Human Molecular Genetics, 2015, 24(15): 4374-4384.
[4] Xiaofei Yang, Lin Gao, Xingli Guo, et . A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases[J]. PLoS One, 2014, 9(1): e87797.
[5] Xiaofei Yang, Xiaojian Shao, Lin Gao, et al. Comparative DNA methylation analysis to decipher common and cell type-specific patterns among multiple cell types[J]. Briefings in Functional Genomics, 2016, 15(6):399-407.
[6] Xingli Guo, Lin Gao, Qi Liao, Hui Xiao, Xiaoke Ma, Xiaofei Yang, et al. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks[J]. Nucleic Acids Research, 2013, 41(2): e35-e35.
[7] Hao Wu, Lin Gao, Feng Li, Fei Song, Xiaofei Yang, et al. Identifying overlapping mutated driver pathways by constructing gene networks in cancer[J]. BMC Bioinformatics, 2015, 16(Suppl 5): S3.
[8] Hao Wu, Lin Gao, Jihua Dong, Xiaofei Yang. Detecting overlapping protein complexes by rough-fuzzy clustering in protein-protein interaction networks[J]. PloS One, 2014, 9(3): e91856.
[9] Xingli Guo, Lin Gao, Chunshui Wei, Xiaofei Yang, et al. A computational method based on the integration of heterogeneous networks for predicting disease-gene associations[J]. PLoS One, 2011, 6(9): e34171.
[10] Feng Li, Lin Gao, Xiaoke Ma, Xiaofei Yang. Detection of driver pathways using mutated gene network in cancer [J]. Molecular BioSystems, 2016,12, 2135-2141.
[11] 郭杏莉, 高琳*, 刘永轩, 党合萱, 王羽, 杨晓飞, et al. 长非编码 RNA 生物特征研究与分析. 科学通报, 2013, 58(27): 2779-2786;
项目
纵向
[1] 乙肝相关肝癌精准诊疗标志物的研发与转化，No.2018ZX10302205，科技部重大专项，2018.6 ~ 2020.12，子课题负责人
[2] 基于网络模型的癌症异常DNA甲基化模块挖掘算法研究，No. 61702406, 国家自然科学基金青年项目，2018.1 ~ 2020.12，主持
[3] 基于网络模型的癌症相关模式挖掘理论与方法 No.61532014，国家自然科学基金重点项目，2016.1~2020.12 参与
English
Name: Xiaofei Yang
Job Tittle: Assistant Professor
Position:
Addr: 105 Pengkang Building
Tel: 15877348154
Fax:
Email: xfyang@xjtu.edu.cn
EDUCATION
2007-2011, Xidian University, Software Engineering, Bachelor degree
2011-2016, Xidian University, Computer Application Technology, PhD.
EXPERIENCES
2017.6 - now, Xi’an Jiaotong University, Assistant Professor
2018.10 – now, The Jackson Laboratory for Genomic Medicine (US), Visiting Scholar.
ACADEMIC AWARDs and Honors
2014.12 National scholarship for graduate students
2015.12 National scholarship for graduate students
ACADEMIC Services
Reviewers of journals like Database, Neurocomputing, Briefings in Functional Genomics. Reviews for CAC2015 and CAC2018.
Expertise and Research Interests
Bioinformatics
Selected Publications
Books
[1] Kai Ye, Li Guo, Xiaofei Yang, et al, Split-Read Indel and Structural Variant Calling Using PINDEL, Methods in molecular biology (Clifton, N.J.) 1833:95-105, July 2018, DOI: 10.1007/978-1-4939-8666-8_7 (Book chapter)
Papers
[1] Li Guo*, Thilo Winzer*, Xiaofei Yang*, Yi Li*, Zemin Ning*, Zhesi He, Roxana Teodor, Ying Lu, Tim A. Bowser, Ian A. Graham†, Kai Ye†, The opium poppy genome and morphinan production, Science, 30 Aug 2018: eaat4096 DOI: 10.1126/science.aat4096, (*:co-first author, †co-corresponding author）
[2] Xiaofei Yang, Lin Gao, Shihua Zhang. Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns, Briefings in Bioinformatics, 2017, 18(5):761-773.
[3] Xiaofei Yang, Xiaojian Shao, Lin Gao, et al. Systematic DNA methylation analysis of multiple cell lines reveals common and specific patterns within and across tissues of origin[J]. Human Molecular Genetics, 2015, 24(15): 4374-4384.
[4] Xiaofei Yang, Lin Gao, Xingli Guo, et . A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases[J]. PLoS One, 2014, 9(1): e87797.
[5] Xiaofei Yang, Xiaojian Shao, Lin Gao, et al. Comparative DNA methylation analysis to decipher common and cell type-specific patterns among multiple cell types[J]. Briefings in Functional Genomics, 2016, 15(6):399-407.
[6] Xingli Guo, Lin Gao, Qi Liao, Hui Xiao, Xiaoke Ma, Xiaofei Yang, et al. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks[J]. Nucleic Acids Research, 2013, 41(2): e35-e35.
[7] Hao Wu, Lin Gao, Feng Li, Fei Song, Xiaofei Yang, et al. Identifying overlapping mutated driver pathways by constructing gene networks in cancer[J]. BMC Bioinformatics, 2015, 16(Suppl 5): S3.
[8] Hao Wu, Lin Gao, Jihua Dong, Xiaofei Yang. Detecting overlapping protein complexes by rough-fuzzy clustering in protein-protein interaction networks[J]. PloS One, 2014, 9(3): e91856.
[9] Xingli Guo, Lin Gao, Chunshui Wei, Xiaofei Yang, et al. A computational method based on the integration of heterogeneous networks for predicting disease-gene associations[J]. PLoS One, 2011, 6(9): e34171.
[10] Feng Li, Lin Gao, Xiaoke Ma, Xiaofei Yang. Detection of driver pathways using mutated gene network in cancer [J]. Molecular BioSystems, 2016,12, 2135-2141.
Project
Funded by the Government
[1] Development and transformation of biomarkers for precision medicine of hepatitis B associated liver cancer，No.2018ZX10302205，the National Science and Technology Major Project of China，2018.6 ~ 2020.12，Participant
[2] Network based method for discovering abnormal DNA methylation patterns, No. 61702406, National Natural Science Foundation of China, 2018.1 ~ 2020.12，Principle Investigator
[3] Theory and methods for discovering cancer genomic patterns based on network model, No.61532014, National Natural Science Foundation of China，2016.1~2020.12 Participant